Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs4243967 | chr11:4162002 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs4253288 | chr4:187166893 | T/C | 3.8E-5 | 486 | 16.87 | 16.08 | 15.9 | KM Plot |
| THCA | rs4253407 | chr4:187193308 | A/T | 1.06E-8 | 473 | 13.7 | 17.7 | 15.2 | KM Plot |
| THCA | rs4270469 | chr3:139263101 | T/A | 3.37E-5 | 489 | 15.9 | 17.1 | 13.08 | KM Plot |
| THCA | rs4283654 | chr4:84161433 | A/G | 2.44E-5 | 490 | 15.67 | 18.37 | 3.27 | KM Plot |
| THCA | rs4291262 | chr8:52439028 | G/T | 0.000186 | 490 | 15 | 17.18 | 18.3 | KM Plot |
| THCA | rs4296184 | chr14:59749007 | G/T | 1.06E-8 | 486 | 16.38 | 12.48 | 5.45 | KM Plot |
| THCA | rs4297015 | chr8:110086268 | C/T | 7.42E-6 | 490 | 16.37 | 15.15 | 15.08 | KM Plot |
| THCA | rs4309533 | chr2:128588605 | G/A | 5.33E-5 | 476 | 15.9 | 16.3 | 17.35 | KM Plot |
| THCA | rs4321993 | chr8:52439105 | G/A | 0.000196 | 489 | 15 | 17.13 | 18.3 | KM Plot |
| THCA | rs4342991 | chr11:93853670 | G/C | 4.95E-5 | 489 | 15.33 | 16.73 | 8.42 | KM Plot |
| THCA | rs4348286 | chr6:87178803 | A/G | 1.71E-14 | 481 | 15 | 16.72 | 25.67 | KM Plot |
| THCA | rs4353212 | chr10:81652072 | A/G | 0 | 484 | 16.08 | 16.65 | 5.92 | KM Plot |
| THCA | rs4353905 | chr4:110745938 | A/G | 5.88E-5 | 489 | 15.87 | 16.02 | 15.3 | KM Plot |
| THCA | rs4360493 | chr1:181553399 | T/G | 1.44E-6 | 484 | 15.63 | 18.4 | 17.77 | KM Plot |